J3_8CKU_037

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CKU_037 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.111

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8CKU|1|c|A|41
8CKU|1|c|G|42
*
8CKU|1|c|C|433
8CKU|1|c|G|434
8CKU|1|c|C|435
8CKU|1|c|A2M|436
8CKU|1|c|A|437
8CKU|1|c|A|438
8CKU|1|c|U|439
*
8CKU|1|c|A|464
8CKU|1|c|G|465
8CKU|1|c|U|466

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A