J3_8CKU_038
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8CKU|1|c|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_038 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.1437
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8CKU|1|c|U|633
8CKU|1|c|G|634
8CKU|1|c|A|635
*
8CKU|1|c|U|861
8CKU|1|c|A|862
8CKU|1|c|A|863
8CKU|1|c|U|864
8CKU|1|c|A|865
*
8CKU|1|c|U|965
8CKU|1|c|A|966
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S27-A
- Chain k
- 40S ribosomal protein S7-A
- Chain o
- 40S ribosomal protein S11-A
- Chain p
- 40S ribosomal protein S13
- Chain y
- 40S ribosomal protein S22-A
- Chain z
- 40S ribosomal protein S23-A
Coloring options: