3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
UGGA*UAC*G(G7M)AA
Length
11 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CMJ_016 not in the Motif Atlas
Homologous match to J3_4V88_036
Geometric discrepancy: 0.2491
The information below is about J3_4V88_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.2
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8CMJ|1|c|U|1168
8CMJ|1|c|G|1169
8CMJ|1|c|G|1170
8CMJ|1|c|A|1171
*
8CMJ|1|c|U|1468
8CMJ|1|c|A|1469
8CMJ|1|c|C|1470
*
8CMJ|1|c|G|1574
8CMJ|1|c|G7M|1575
8CMJ|1|c|A|1576
8CMJ|1|c|A|1577

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain i
40S ribosomal protein S5
Chain s
40S ribosomal protein S16-A
Chain u
40S ribosomal protein S18-A
Chain v
40S ribosomal protein S19-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1641 s