J3_8CMJ_019
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8CMJ|1|c|U|1413, 8CMJ|1|c|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CMJ_019 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.3295
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8CMJ|1|c|A|1336
8CMJ|1|c|A|1337
8CMJ|1|c|C|1338
*
8CMJ|1|c|G|1386
8CMJ|1|c|G|1387
8CMJ|1|c|A|1388
8CMJ|1|c|C|1389
*
8CMJ|1|c|G|1412
8CMJ|1|c|U|1413
8CMJ|1|c|U|1414
8CMJ|1|c|U|1415
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 7
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain t
- 40S ribosomal protein S17-A
- Chain w
- 40S ribosomal protein S20
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