J3_8CMJ_024
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8CMJ|1|AA|A|398, 8CMJ|1|AA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CMJ_024 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1139
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8CMJ|1|AA|A|369
8CMJ|1|AA|U|370
8CMJ|1|AA|G|371
8CMJ|1|AA|A|372
8CMJ|1|AA|A|373
8CMJ|1|AA|A|374
8CMJ|1|AA|A|375
8CMJ|1|AA|G|376
8CMJ|1|AA|A|377
8CMJ|1|AA|A|378
8CMJ|1|AA|C|379
*
8CMJ|1|AA|G|390
8CMJ|1|AA|A|391
8CMJ|1|AA|G|392
8CMJ|1|AA|U|393
8CMJ|1|AA|G|394
8CMJ|1|AA|A|395
8CMJ|1|AA|A|396
8CMJ|1|AA|A|397
8CMJ|1|AA|A|398
8CMJ|1|AA|A|399
8CMJ|1|AA|G|400
8CMJ|1|AA|U|401
8CMJ|1|AA|A|402
8CMJ|1|AA|C|403
8CMJ|1|AA|G|404
*
8CMJ|1|CC|C|19
8CMJ|1|CC|U|20
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L26-A
- Chain X
- 60S ribosomal protein L39
Coloring options: