J3_8CMJ_028
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CMJ_028 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1329
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8CMJ|1|AA|U|1526
8CMJ|1|AA|C|1527
8CMJ|1|AA|G|1528
8CMJ|1|AA|A|1529
8CMJ|1|AA|U|1530
8CMJ|1|AA|C|1531
*
8CMJ|1|AA|G|1591
8CMJ|1|AA|G|1592
8CMJ|1|AA|A|1593
8CMJ|1|AA|A|1594
8CMJ|1|AA|U|1595
*
8CMJ|1|AA|A|1612
8CMJ|1|AA|A|1613
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein L25
- Chain S
- 60S ribosomal protein L34-A
- Chain W
- 60S ribosomal protein L38
- Chain X
- 60S ribosomal protein L39
Coloring options: