J3_8CMJ_039

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CMJ_039 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1544

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8CMJ|1|c|A|41
8CMJ|1|c|G|42
*
8CMJ|1|c|C|433
8CMJ|1|c|G|434
8CMJ|1|c|C|435
8CMJ|1|c|A2M|436
8CMJ|1|c|A|437
8CMJ|1|c|A|438
8CMJ|1|c|U|439
*
8CMJ|1|c|A|464
8CMJ|1|c|G|465
8CMJ|1|c|U|466

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A