J3_8CMJ_044

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

8CMJ|1|c|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CMJ_044 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.2837

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8CMJ|1|c|U|1293
8CMJ|1|c|G|1294
*
8CMJ|1|c|U|1303
8CMJ|1|c|G|1304
8CMJ|1|c|U|1305
8CMJ|1|c|C|1306
*
8CMJ|1|c|G|1318
8CMJ|1|c|A|1319
8CMJ|1|c|U|1320
8CMJ|1|c|A|1321
8CMJ|1|c|A|1322

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S0-A

Chain f

40S ribosomal protein S2

Chain t

40S ribosomal protein S17-A