J3_8CRE_035
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CUAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8CRE|1|AS|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_035 not in the Motif Atlas
- Homologous match to J3_8C3A_050
- Geometric discrepancy: 0.0524
- The information below is about J3_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CRE|1|AS|U|497
8CRE|1|AS|C|498
*
8CRE|1|AS|G|586
8CRE|1|AS|A|587
8CRE|1|AS|G|588
8CRE|1|AS|G|589
8CRE|1|AS|A|590
8CRE|1|AS|C|591
8CRE|1|AS|U|592
8CRE|1|AS|G|593
8CRE|1|AS|C|594
8CRE|1|AS|G|595
*
8CRE|1|AS|C|604
8CRE|1|AS|U|605
8CRE|1|AS|A|606
8CRE|1|AS|G|607
8CRE|1|AS|G|608
8CRE|1|AS|A|609
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BA
- 60S ribosomal protein L6
- Chain BB
- 60S ribosomal protein L7-A
- Chain BZ
- 60S ribosomal protein L32
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