J3_8CRE_057
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAGAUAAAAAAUCAAUG*CUCUUUG*CAUA
- Length
- 28 nucleotides
- Bulged bases
- 8CRE|1|B|A|215, 8CRE|1|B|A|216, 8CRE|1|B|U|238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_057 not in the Motif Atlas
- Homologous match to J3_8C3A_084
- Geometric discrepancy: 0.443
- The information below is about J3_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67192.1
- Basepair signature
- cWW-F-F-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8CRE|1|B|U|210
8CRE|1|B|A|211
8CRE|1|B|G|212
8CRE|1|B|A|213
8CRE|1|B|U|214
8CRE|1|B|A|215
8CRE|1|B|A|216
8CRE|1|B|A|217
8CRE|1|B|A|218
8CRE|1|B|A|219
8CRE|1|B|A|220
8CRE|1|B|U|221
8CRE|1|B|C|222
8CRE|1|B|A|223
8CRE|1|B|A|224
8CRE|1|B|U|225
8CRE|1|B|G|226
*
8CRE|1|B|C|235
8CRE|1|B|U|236
8CRE|1|B|C|237
8CRE|1|B|U|238
8CRE|1|B|U|239
8CRE|1|B|U|240
8CRE|1|B|G|241
*
8CRE|1|B|C|248
8CRE|1|B|A|249
8CRE|1|B|U|250
8CRE|1|B|A|251
Current chains
- Chain B
- 18S
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
- Chain N
- 40S ribosomal protein S11A
Coloring options: