J3_8CRX_010

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CRX_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1082

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8CRX|1|A|U|1058
8CRX|1|A|G|1059
*
8CRX|1|A|U|1068
8CRX|1|A|G|1069
8CRX|1|A|U|1070
8CRX|1|A|U|1071
8CRX|1|A|G|1072
*
8CRX|1|A|C|1083
8CRX|1|A|G|1084
8CRX|1|A|C|1085
8CRX|1|A|A|1086
8CRX|1|A|A|1087

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

30S ribosomal protein S5