J3_8CRX_020

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAAG*CCUAAAC*GUG

Length

14 nucleotides

Bulged bases

8CRX|1|a|U|1791, 8CRX|1|a|A|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CRX_020 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3019

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8CRX|1|a|C|1382
8CRX|1|a|A|1383
8CRX|1|a|A|1384
8CRX|1|a|G|1385
*
8CRX|1|a|C|1789
8CRX|1|a|C|1790
8CRX|1|a|U|1791
8CRX|1|a|A|1792
8CRX|1|a|A|1793
8CRX|1|a|A|1794
8CRX|1|a|C|1795
*
8CRX|1|a|G|1804
8CRX|1|a|U|1805
8CRX|1|a|G|1806

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34