J3_8CRX_021

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UCGGGUC*GGUAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CRX_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1622

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8CRX|1|a|U|1420
8CRX|1|a|C|1421
8CRX|1|a|G|1422
8CRX|1|a|G|1423
8CRX|1|a|G|1424
8CRX|1|a|U|1425
8CRX|1|a|C|1426
*
8CRX|1|a|G|1457
8CRX|1|a|G|1458
8CRX|1|a|U|1459
8CRX|1|a|A|1460
8CRX|1|a|A|1461
*
8CRX|1|a|U|1478
8CRX|1|a|A|1479

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23