J3_8CRX_024

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8CRX|1|a|A|2700, 8CRX|1|a|U|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CRX_024 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0824

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8CRX|1|a|C|2699
8CRX|1|a|A|2700
8CRX|1|a|U|2701
8CRX|1|a|C|2702
*
8CRX|1|a|G|2727
8CRX|1|a|U|2728
8CRX|1|a|U|2729
*
8CRX|1|a|A|2743
8CRX|1|a|U|2744
8CRX|1|a|U|2745
8CRX|1|a|A|2746
8CRX|1|a|A|2747
8CRX|1|a|A|2748
8CRX|1|a|G|2749

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14