J3_8CRX_033
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CUUG*CGAUAGUGGAUGAGUAC*GGAAGG
- Length
- 27 nucleotides
- Bulged bases
- 8CRX|1|a|U|33, 8CRX|1|a|U|537, 8CRX|1|a|G|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRX_033 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2211
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CRX|1|a|C|31
8CRX|1|a|U|32
8CRX|1|a|U|33
8CRX|1|a|G|34
*
8CRX|1|a|C|534
8CRX|1|a|G|535
8CRX|1|a|A|536
8CRX|1|a|U|537
8CRX|1|a|A|538
8CRX|1|a|G|539
8CRX|1|a|U|540
8CRX|1|a|G|541
8CRX|1|a|G|542
8CRX|1|a|A|543
8CRX|1|a|U|544
8CRX|1|a|G|545
8CRX|1|a|A|546
8CRX|1|a|G|547
8CRX|1|a|U|548
8CRX|1|a|A|549
8CRX|1|a|C|550
*
8CRX|1|a|G|557
8CRX|1|a|G|558
8CRX|1|a|A|559
8CRX|1|a|A|560
8CRX|1|a|G|561
8CRX|1|a|G|562
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L23
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