J3_8CVJ_013
3D structure
- PDB id
- 8CVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 8CVJ|1|1A|G|2833, 8CVJ|1|1A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVJ_013 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1517
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CVJ|1|1A|C|2814
8CVJ|1|1A|C|2815
*
8CVJ|1|1A|G|2831
8CVJ|1|1A|U|2832
8CVJ|1|1A|G|2833
8CVJ|1|1A|G|2834
8CVJ|1|1A|A|2835
8CVJ|1|1A|U|2836
*
8CVJ|1|1A|A|2882
8CVJ|1|1A|A|2883
8CVJ|1|1A|U|2884
8CVJ|1|1A|C|2885
8CVJ|1|1A|G|2886
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
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