J3_8CVJ_031

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8CVJ|1|2A|G|686, 8CVJ|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVJ_031 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0742

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

8CVJ|1|2A|C|683
8CVJ|1|2A|G|684
8CVJ|1|2A|A|685
8CVJ|1|2A|G|686
8CVJ|1|2A|C|687
8CVJ|1|2A|U|688
8CVJ|1|2A|A|689
*
8CVJ|1|2A|U|773
8CVJ|1|2A|A|774
8CVJ|1|2A|G|775
*
8CVJ|1|2A|C|791
8CVJ|1|2A|G|792
8CVJ|1|2A|A|793
8CVJ|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2