J3_8CVJ_055

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8CVJ|1|1A|U|448, 8CVJ|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVJ_055 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0727

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8CVJ|1|1A|C|32
8CVJ|1|1A|U|33
8CVJ|1|1A|C|34
8CVJ|1|1A|G|35
*
8CVJ|1|1A|C|445
8CVJ|1|1A|G|446
8CVJ|1|1A|A|447
8CVJ|1|1A|U|448
8CVJ|1|1A|A|449
8CVJ|1|1A|G|450
8CVJ|1|1A|C|451
8CVJ|1|1A|G|452
8CVJ|1|1A|C|453
8CVJ|1|1A|A|454
8CVJ|1|1A|C|455
8CVJ|1|1A|C|456
8CVJ|1|1A|A|457
8CVJ|1|1A|G|458
8CVJ|1|1A|U|459
8CVJ|1|1A|A|460
8CVJ|1|1A|C|461
*
8CVJ|1|1A|G|468
8CVJ|1|1A|G|469
8CVJ|1|1A|A|470
8CVJ|1|1A|A|471
8CVJ|1|1A|A|472
8CVJ|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23