J3_8CVK_056

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8CVK|1|1A|U|448, 8CVK|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVK_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0607

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8CVK|1|1A|C|32
8CVK|1|1A|U|33
8CVK|1|1A|C|34
8CVK|1|1A|G|35
*
8CVK|1|1A|C|445
8CVK|1|1A|G|446
8CVK|1|1A|A|447
8CVK|1|1A|U|448
8CVK|1|1A|A|449
8CVK|1|1A|G|450
8CVK|1|1A|C|451
8CVK|1|1A|G|452
8CVK|1|1A|C|453
8CVK|1|1A|A|454
8CVK|1|1A|C|455
8CVK|1|1A|C|456
8CVK|1|1A|A|457
8CVK|1|1A|G|458
8CVK|1|1A|U|459
8CVK|1|1A|A|460
8CVK|1|1A|C|461
*
8CVK|1|1A|G|468
8CVK|1|1A|G|469
8CVK|1|1A|A|470
8CVK|1|1A|A|471
8CVK|1|1A|A|472
8CVK|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23