J3_8CVK_066

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8CVK|1|2A|U|504, 8CVK|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVK_066 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0621

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8CVK|1|2A|G|30
8CVK|1|2A|C|31
*
8CVK|1|2A|G|474
8CVK|1|2A|U|475
8CVK|1|2A|G|476
8CVK|1|2A|A|477
8CVK|1|2A|A|478
8CVK|1|2A|A|479
8CVK|1|2A|A|480
8CVK|1|2A|G|481
8CVK|1|2A|A|482
8CVK|1|2A|A|483
8CVK|1|2A|C|484
*
8CVK|1|2A|G|496
8CVK|1|2A|A|497
8CVK|1|2A|G|498
8CVK|1|2A|U|499
8CVK|1|2A|G|500
8CVK|1|2A|A|501
8CVK|1|2A|A|502
8CVK|1|2A|A|503
8CVK|1|2A|U|504
8CVK|1|2A|A|505
8CVK|1|2A|G|506
8CVK|1|2A|A|507
8CVK|1|2A|G|508
8CVK|1|2A|C|509
8CVK|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24