J3_8CVL_065

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8CVL|1|2A|U|504, 8CVL|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVL_065 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0508

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8CVL|1|2A|G|30
8CVL|1|2A|C|31
*
8CVL|1|2A|G|474
8CVL|1|2A|U|475
8CVL|1|2A|G|476
8CVL|1|2A|A|477
8CVL|1|2A|A|478
8CVL|1|2A|A|479
8CVL|1|2A|A|480
8CVL|1|2A|G|481
8CVL|1|2A|A|482
8CVL|1|2A|A|483
8CVL|1|2A|C|484
*
8CVL|1|2A|G|496
8CVL|1|2A|A|497
8CVL|1|2A|G|498
8CVL|1|2A|U|499
8CVL|1|2A|G|500
8CVL|1|2A|A|501
8CVL|1|2A|A|502
8CVL|1|2A|A|503
8CVL|1|2A|U|504
8CVL|1|2A|A|505
8CVL|1|2A|G|506
8CVL|1|2A|A|507
8CVL|1|2A|G|508
8CVL|1|2A|C|509
8CVL|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24