3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8CVL|1|2A|C|34, 8CVL|1|2A|U|448, 8CVL|1|2A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CVL_066 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0835
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8CVL|1|2A|C|32
8CVL|1|2A|U|33
8CVL|1|2A|C|34
8CVL|1|2A|G|35
*
8CVL|1|2A|C|445
8CVL|1|2A|G|446
8CVL|1|2A|A|447
8CVL|1|2A|U|448
8CVL|1|2A|A|449
8CVL|1|2A|G|450
8CVL|1|2A|C|451
8CVL|1|2A|G|452
8CVL|1|2A|C|453
8CVL|1|2A|A|454
8CVL|1|2A|C|455
8CVL|1|2A|C|456
8CVL|1|2A|A|457
8CVL|1|2A|G|458
8CVL|1|2A|U|459
8CVL|1|2A|A|460
8CVL|1|2A|C|461
*
8CVL|1|2A|G|468
8CVL|1|2A|G|469
8CVL|1|2A|A|470
8CVL|1|2A|A|471
8CVL|1|2A|A|472
8CVL|1|2A|G|473

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2F
50S ribosomal protein L4
Chain 2U
50S ribosomal protein L20
Chain 2X
50S ribosomal protein L23

Coloring options:


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