J3_8CVL_072

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8CVL|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVL_072 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1413

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8CVL|1|2a|C|990
8CVL|1|2a|U|991
8CVL|1|2a|U|992
8CVL|1|2a|G|993
8CVL|1|2a|A|994
8CVL|1|2a|C|995
8CVL|1|2a|A|996
8CVL|1|2a|U|997
*
8CVL|1|2a|A|1044
8CVL|1|2a|C|1045
8CVL|1|2a|A|1046
8CVL|1|2a|G|1047
*
8CVL|1|2a|C|1210
8CVL|1|2a|U|1211
8CVL|1|2a|U|1212
8CVL|1|2a|A|1213
8CVL|1|2a|C|1214
8CVL|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z