J3_8CVM_002
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AC*GAUAAGC*GGUGU
- Length
- 14 nucleotides
- Bulged bases
- 8CVM|1|a|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVM_002 not in the Motif Atlas
- Homologous match to J3_7RQB_002
- Geometric discrepancy: 0.0958
- The information below is about J3_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84625.2
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CVM|1|a|A|55
8CVM|1|a|C|56
*
8CVM|1|a|G|69
8CVM|1|a|A|70
8CVM|1|a|U|71
8CVM|1|a|A|72
8CVM|1|a|A|73
8CVM|1|a|G|74
8CVM|1|a|C|75
*
8CVM|1|a|G|109
8CVM|1|a|G|110
8CVM|1|a|U|111
8CVM|1|a|G|112
8CVM|1|a|U|113
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- 50S ribosomal protein L29
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