J3_8CVM_006

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

8CVM|1|a|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3996

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|G|1138
8CVM|1|a|G|1139
8CVM|1|a|A|1140
*
8CVM|1|a|U|1164
8CVM|1|a|U|1165
8CVM|1|a|G|1166
8CVM|1|a|A|1167
8CVM|1|a|A|1168
8CVM|1|a|A|1169
8CVM|1|a|G|1170
*
8CVM|1|a|C|1185
8CVM|1|a|A|1186
8CVM|1|a|C|1187

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36