J3_8CVM_008

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAAG*CCUAAAC*GUG

Length

14 nucleotides

Bulged bases

8CVM|1|a|U|1791, 8CVM|1|a|A|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_008 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3019

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8CVM|1|a|C|1382
8CVM|1|a|A|1383
8CVM|1|a|A|1384
8CVM|1|a|G|1385
*
8CVM|1|a|C|1789
8CVM|1|a|C|1790
8CVM|1|a|U|1791
8CVM|1|a|A|1792
8CVM|1|a|A|1793
8CVM|1|a|A|1794
8CVM|1|a|C|1795
*
8CVM|1|a|G|1804
8CVM|1|a|U|1805
8CVM|1|a|G|1806

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34