J3_8CVM_009

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UCGGGUC*GGUAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1622

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8CVM|1|a|U|1420
8CVM|1|a|C|1421
8CVM|1|a|G|1422
8CVM|1|a|G|1423
8CVM|1|a|G|1424
8CVM|1|a|U|1425
8CVM|1|a|C|1426
*
8CVM|1|a|G|1457
8CVM|1|a|G|1458
8CVM|1|a|U|1459
8CVM|1|a|A|1460
8CVM|1|a|A|1461
*
8CVM|1|a|U|1478
8CVM|1|a|A|1479

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23