J3_8CVM_010

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUG*CUCAC*GGACAG

Length

14 nucleotides

Bulged bases

8CVM|1|a|C|2380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_010 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0971

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8CVM|1|a|U|2273
8CVM|1|a|U|2274
8CVM|1|a|G|2275
*
8CVM|1|a|C|2378
8CVM|1|a|U|2379
8CVM|1|a|C|2380
8CVM|1|a|A|2381
8CVM|1|a|C|2382
*
8CVM|1|a|G|2405
8CVM|1|a|G|2406
8CVM|1|a|A|2407
8CVM|1|a|C|2408
8CVM|1|a|A|2409
8CVM|1|a|G|2410

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28