J3_8CVM_011
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 8CVM|1|a|C|2516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVM_011 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1636
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CVM|1|a|C|2477
8CVM|1|a|U|2478
8CVM|1|a|C|2479
*
8CVM|1|a|G|2503
8CVM|1|a|A|2504
8CVM|1|a|G|2505
*
8CVM|1|a|C|2514
8CVM|1|a|A|2515
8CVM|1|a|C|2516
8CVM|1|a|A|2517
8CVM|1|a|A|2518
8CVM|1|a|G|2519
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L27
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