J3_8CVM_012

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8CVM|1|a|A|2700, 8CVM|1|a|U|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0824

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|C|2699
8CVM|1|a|A|2700
8CVM|1|a|U|2701
8CVM|1|a|C|2702
*
8CVM|1|a|G|2727
8CVM|1|a|U|2728
8CVM|1|a|U|2729
*
8CVM|1|a|A|2743
8CVM|1|a|U|2744
8CVM|1|a|U|2745
8CVM|1|a|A|2746
8CVM|1|a|A|2747
8CVM|1|a|A|2748
8CVM|1|a|G|2749

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14