J3_8CVO_002
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CGGA*UAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVO_002 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0556
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CVO|1|A|C|927
8CVO|1|A|G|928
8CVO|1|A|G|929
8CVO|1|A|A|930
*
8CVO|1|A|U|1221
8CVO|1|A|A|1222
8CVO|1|A|C|1223
*
8CVO|1|A|G|1323
8CVO|1|A|G|1324
8CVO|1|A|A|1325
8CVO|1|A|G|1326
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S9
- Chain N
- 30S ribosomal protein S13
Coloring options: