J3_8CVO_010

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

8CVO|1|A|A|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVO_010 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1437

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8CVO|1|A|U|1058
8CVO|1|A|G|1059
*
8CVO|1|A|U|1068
8CVO|1|A|G|1069
8CVO|1|A|U|1070
8CVO|1|A|U|1071
*
8CVO|1|A|G|1084
8CVO|1|A|C|1085
8CVO|1|A|A|1086
8CVO|1|A|A|1087

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5