J3_8E32_011

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E32|1|I|A|504, 8E32|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E32_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1221

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8E32|1|I|G|30
8E32|1|I|C|31
*
8E32|1|I|G|474
8E32|1|I|C|475
8E32|1|I|G|476
8E32|1|I|A|477
8E32|1|I|A|478
8E32|1|I|A|479
8E32|1|I|A|480
8E32|1|I|G|481
8E32|1|I|A|482
8E32|1|I|A|483
8E32|1|I|C|484
*
8E32|1|I|G|496
8E32|1|I|A|497
8E32|1|I|G|498
8E32|1|I|U|499
8E32|1|I|G|500
8E32|1|I|A|501
8E32|1|I|A|502
8E32|1|I|A|503
8E32|1|I|A|504
8E32|1|I|A|505
8E32|1|I|G|506
8E32|1|I|A|507
8E32|1|I|A|508
8E32|1|I|C|509
8E32|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22