J3_8E33_011

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E33|1|I|A|504, 8E33|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E33_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1039

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E33|1|I|G|30
8E33|1|I|C|31
*
8E33|1|I|G|474
8E33|1|I|C|475
8E33|1|I|G|476
8E33|1|I|A|477
8E33|1|I|A|478
8E33|1|I|A|479
8E33|1|I|A|480
8E33|1|I|G|481
8E33|1|I|A|482
8E33|1|I|A|483
8E33|1|I|C|484
*
8E33|1|I|G|496
8E33|1|I|A|497
8E33|1|I|G|498
8E33|1|I|U|499
8E33|1|I|G|500
8E33|1|I|A|501
8E33|1|I|A|502
8E33|1|I|A|503
8E33|1|I|A|504
8E33|1|I|A|505
8E33|1|I|G|506
8E33|1|I|A|507
8E33|1|I|A|508
8E33|1|I|C|509
8E33|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22