J3_8E35_004
3D structure
- PDB id
- 8E35 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound SAB002
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.27 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 8E35|1|I|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8E35_004 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.1053
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8E35|1|I|C|1306
8E35|1|I|A|1307
8E35|1|I|A|1308
8E35|1|I|G|1309
*
8E35|1|I|C|1605
8E35|1|I|C|1606
8E35|1|I|C|1607
8E35|1|I|A|1608
8E35|1|I|A|1609
8E35|1|I|A|1610
8E35|1|I|C|1611
*
8E35|1|I|G|1620
8E35|1|I|U|1621
8E35|1|I|G|1622
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S ribosomal protein L34
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