J3_8E35_009

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E35|1|I|A|504, 8E35|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E35_009 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1389

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8E35|1|I|G|30
8E35|1|I|C|31
*
8E35|1|I|G|474
8E35|1|I|C|475
8E35|1|I|G|476
8E35|1|I|A|477
8E35|1|I|A|478
8E35|1|I|A|479
8E35|1|I|A|480
8E35|1|I|G|481
8E35|1|I|A|482
8E35|1|I|A|483
8E35|1|I|C|484
*
8E35|1|I|G|496
8E35|1|I|A|497
8E35|1|I|G|498
8E35|1|I|U|499
8E35|1|I|G|500
8E35|1|I|A|501
8E35|1|I|A|502
8E35|1|I|A|503
8E35|1|I|A|504
8E35|1|I|A|505
8E35|1|I|G|506
8E35|1|I|A|507
8E35|1|I|A|508
8E35|1|I|C|509
8E35|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22