J3_8E36_011

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E36|1|I|A|504, 8E36|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E36_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1068

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E36|1|I|G|30
8E36|1|I|C|31
*
8E36|1|I|G|474
8E36|1|I|C|475
8E36|1|I|G|476
8E36|1|I|A|477
8E36|1|I|A|478
8E36|1|I|A|479
8E36|1|I|A|480
8E36|1|I|G|481
8E36|1|I|A|482
8E36|1|I|A|483
8E36|1|I|C|484
*
8E36|1|I|G|496
8E36|1|I|A|497
8E36|1|I|G|498
8E36|1|I|U|499
8E36|1|I|G|500
8E36|1|I|A|501
8E36|1|I|A|502
8E36|1|I|A|503
8E36|1|I|A|504
8E36|1|I|A|505
8E36|1|I|G|506
8E36|1|I|A|507
8E36|1|I|A|508
8E36|1|I|C|509
8E36|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22