J3_8E3L_010

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E3L|1|I|A|504, 8E3L|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E3L_010 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.137

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8E3L|1|I|G|30
8E3L|1|I|C|31
*
8E3L|1|I|G|474
8E3L|1|I|C|475
8E3L|1|I|G|476
8E3L|1|I|A|477
8E3L|1|I|A|478
8E3L|1|I|A|479
8E3L|1|I|A|480
8E3L|1|I|G|481
8E3L|1|I|A|482
8E3L|1|I|A|483
8E3L|1|I|C|484
*
8E3L|1|I|G|496
8E3L|1|I|A|497
8E3L|1|I|G|498
8E3L|1|I|U|499
8E3L|1|I|G|500
8E3L|1|I|A|501
8E3L|1|I|A|502
8E3L|1|I|A|503
8E3L|1|I|A|504
8E3L|1|I|A|505
8E3L|1|I|G|506
8E3L|1|I|A|507
8E3L|1|I|A|508
8E3L|1|I|C|509
8E3L|1|I|C|510

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22