J3_8E41_016
3D structure
- PDB id
- 8E41 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to tiamulin and VS1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8E41_016 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.0545
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8E41|1|I|G|1424
8E41|1|I|G|1425
8E41|1|I|G|1426
8E41|1|I|A|1427
8E41|1|I|C|1428
8E41|1|I|G|1429
*
8E41|1|I|C|1564
8E41|1|I|C|1565
*
8E41|1|I|G|1568
8E41|1|I|A|1569
8E41|1|I|A|1570
8E41|1|I|A|1571
8E41|1|I|A|1572
8E41|1|I|G|1573
8E41|1|I|C|1574
Current chains
- Chain I
- 50S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
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