J3_8E43_004

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8E43|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E43_004 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1123

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8E43|1|I|C|1306
8E43|1|I|A|1307
8E43|1|I|A|1308
8E43|1|I|G|1309
*
8E43|1|I|C|1605
8E43|1|I|C|1606
8E43|1|I|C|1607
8E43|1|I|A|1608
8E43|1|I|A|1609
8E43|1|I|A|1610
8E43|1|I|C|1611
*
8E43|1|I|G|1620
8E43|1|I|U|1621
8E43|1|I|G|1622

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34