J3_8E43_011

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E43|1|I|A|504, 8E43|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E43_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1073

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8E43|1|I|G|30
8E43|1|I|C|31
*
8E43|1|I|G|474
8E43|1|I|C|475
8E43|1|I|G|476
8E43|1|I|A|477
8E43|1|I|A|478
8E43|1|I|A|479
8E43|1|I|A|480
8E43|1|I|G|481
8E43|1|I|A|482
8E43|1|I|A|483
8E43|1|I|C|484
*
8E43|1|I|G|496
8E43|1|I|A|497
8E43|1|I|G|498
8E43|1|I|U|499
8E43|1|I|G|500
8E43|1|I|A|501
8E43|1|I|A|502
8E43|1|I|A|503
8E43|1|I|A|504
8E43|1|I|A|505
8E43|1|I|G|506
8E43|1|I|A|507
8E43|1|I|A|508
8E43|1|I|C|509
8E43|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22