J3_8E44_011

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E44|1|I|A|504, 8E44|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E44_011 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1008

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E44|1|I|G|30
8E44|1|I|C|31
*
8E44|1|I|G|474
8E44|1|I|C|475
8E44|1|I|G|476
8E44|1|I|A|477
8E44|1|I|A|478
8E44|1|I|A|479
8E44|1|I|A|480
8E44|1|I|G|481
8E44|1|I|A|482
8E44|1|I|A|483
8E44|1|I|C|484
*
8E44|1|I|G|496
8E44|1|I|A|497
8E44|1|I|G|498
8E44|1|I|U|499
8E44|1|I|G|500
8E44|1|I|A|501
8E44|1|I|A|502
8E44|1|I|A|503
8E44|1|I|A|504
8E44|1|I|A|505
8E44|1|I|G|506
8E44|1|I|A|507
8E44|1|I|A|508
8E44|1|I|C|509
8E44|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22