J3_8E47_009

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E47|1|I|A|504, 8E47|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E47_009 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1451

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E47|1|I|G|30
8E47|1|I|C|31
*
8E47|1|I|G|474
8E47|1|I|C|475
8E47|1|I|G|476
8E47|1|I|A|477
8E47|1|I|A|478
8E47|1|I|A|479
8E47|1|I|A|480
8E47|1|I|G|481
8E47|1|I|A|482
8E47|1|I|A|483
8E47|1|I|C|484
*
8E47|1|I|G|496
8E47|1|I|A|497
8E47|1|I|G|498
8E47|1|I|U|499
8E47|1|I|G|500
8E47|1|I|A|501
8E47|1|I|A|502
8E47|1|I|A|503
8E47|1|I|A|504
8E47|1|I|A|505
8E47|1|I|G|506
8E47|1|I|A|507
8E47|1|I|A|508
8E47|1|I|C|509
8E47|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22