J3_8E48_010

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8E48|1|I|A|504, 8E48|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E48_010 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1378

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8E48|1|I|G|30
8E48|1|I|C|31
*
8E48|1|I|G|474
8E48|1|I|C|475
8E48|1|I|G|476
8E48|1|I|A|477
8E48|1|I|A|478
8E48|1|I|A|479
8E48|1|I|A|480
8E48|1|I|G|481
8E48|1|I|A|482
8E48|1|I|A|483
8E48|1|I|C|484
*
8E48|1|I|G|496
8E48|1|I|A|497
8E48|1|I|G|498
8E48|1|I|U|499
8E48|1|I|G|500
8E48|1|I|A|501
8E48|1|I|A|502
8E48|1|I|A|503
8E48|1|I|A|504
8E48|1|I|A|505
8E48|1|I|G|506
8E48|1|I|A|507
8E48|1|I|A|508
8E48|1|I|C|509
8E48|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22