J3_8E49_009
3D structure
- PDB id
- 8E49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to antibiotic analog SLC31
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8E49|1|J|U|14, 8E49|1|J|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8E49_009 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.2459
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8E49|1|J|G|10
8E49|1|J|C|11
8E49|1|J|C|12
8E49|1|J|G|13
8E49|1|J|U|14
8E49|1|J|A|15
8E49|1|J|G|16
*
8E49|1|J|C|68
8E49|1|J|G|69
8E49|1|J|C|70
*
8E49|1|J|G|106
8E49|1|J|G|107
8E49|1|J|A|108
8E49|1|J|A|109
8E49|1|J|C|110
Current chains
- Chain J
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: