J3_8EKB_055

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

8EKB|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EKB_055 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.0923

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8EKB|1|2a|C|1237
8EKB|1|2a|A|1238
8EKB|1|2a|A|1239
8EKB|1|2a|U|1240
8EKB|1|2a|G|1241
*
8EKB|1|2a|C|1296
8EKB|1|2a|C|1297
8EKB|1|2a|C|1298
8EKB|1|2a|A|1299
8EKB|1|2a|G|1300
8EKB|1|2a|U|1301
8EKB|1|2a|U|1302
8EKB|1|2a|C|1303
*
8EKB|1|2a|G|1334
8EKB|1|2a|C|1335
8EKB|1|2a|C|1336
8EKB|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx