J3_8EKB_056
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 8EKB|1|1A|U|504, 8EKB|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EKB_056 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0418
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8EKB|1|1A|G|30
8EKB|1|1A|C|31
*
8EKB|1|1A|G|474
8EKB|1|1A|U|475
8EKB|1|1A|G|476
8EKB|1|1A|A|477
8EKB|1|1A|A|478
8EKB|1|1A|A|479
8EKB|1|1A|A|480
8EKB|1|1A|G|481
8EKB|1|1A|A|482
8EKB|1|1A|A|483
8EKB|1|1A|C|484
*
8EKB|1|1A|G|496
8EKB|1|1A|A|497
8EKB|1|1A|G|498
8EKB|1|1A|U|499
8EKB|1|1A|G|500
8EKB|1|1A|A|501
8EKB|1|1A|A|502
8EKB|1|1A|A|503
8EKB|1|1A|U|504
8EKB|1|1A|A|505
8EKB|1|1A|G|506
8EKB|1|1A|A|507
8EKB|1|1A|G|508
8EKB|1|1A|C|509
8EKB|1|1A|C|510
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: