J3_8EMM_012

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8EMM|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EMM_012 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0527

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8EMM|1|a|C|1298
8EMM|1|a|G|1299
8EMM|1|a|G|1300
8EMM|1|a|A|1301
8EMM|1|a|A|1302
8EMM|1|a|G|1303
*
8EMM|1|a|C|1625
8EMM|1|a|A|1626
8EMM|1|a|G|1627
*
8EMM|1|a|C|1639
8EMM|1|a|A|1640
8EMM|1|a|A|1641
8EMM|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains