3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUA*UAG*CAUAAG
Length
12 nucleotides
Bulged bases
8EMM|1|a|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EMM_015 not in the Motif Atlas
Homologous match to J3_5J7L_045
Geometric discrepancy: 0.1285
The information below is about J3_5J7L_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_61124.2
Basepair signature
cWW-tWH-tWW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|C|2295
8EMM|1|a|U|2296
8EMM|1|a|A|2297
*
8EMM|1|a|U|2321
8EMM|1|a|A|2322
8EMM|1|a|G|2323
*
8EMM|1|a|C|2332
8EMM|1|a|A|2333
8EMM|1|a|U|2334
8EMM|1|a|A|2335
8EMM|1|a|A|2336
8EMM|1|a|G|2337

Current chains

Chain a
23S rRNA

Nearby chains

Chain Z
Transfer RNA; tRNA
Chain b
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L5
Chain n
50S ribosomal protein L18
Chain v
50S ribosomal protein L27

Coloring options:


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