J3_8ETI_001
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUCAAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8ETI|1|1|U|117, 8ETI|1|1|A|162
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ETI_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.12
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8ETI|1|1|C|113
8ETI|1|1|A|114
8ETI|1|1|A|115
8ETI|1|1|A|116
8ETI|1|1|U|117
8ETI|1|1|U|118
8ETI|1|1|U|119
8ETI|1|1|G|120
8ETI|1|1|A|121
8ETI|1|1|A|122
8ETI|1|1|A|123
*
8ETI|1|1|U|155
8ETI|1|1|A|156
8ETI|1|1|A|157
8ETI|1|1|U|158
8ETI|1|1|U|159
8ETI|1|1|U|160
8ETI|1|1|C|161
8ETI|1|1|A|162
8ETI|1|1|A|163
8ETI|1|1|G|164
*
8ETI|1|1|C|271
8ETI|1|1|G|272
8ETI|1|1|A|273
8ETI|1|1|A|274
8ETI|1|1|G|275
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain D
- ATP-dependent RNA helicase has1
- Chain G
- 60S ribosomal protein L8
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35
- Chain i
- 60S ribosomal protein L36-B
- Chain m
- Ribosome biogenesis protein erb1
- Chain v
- Nucleolar protein 16
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